# ========= [INFO] ==========
# Mut inCB: not accepter mutation in BC
# Mut inMS: 2
# ReadIn  : /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.seq
# seq_deb : CATGTAGTC
# seq_fin : TCTCT
# MS_seq : A
# excl : C,G,T
# nom  : A15
# log  : /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A15.seq.log
# =============================
#
# condiGrep: CATG.AGTC.+.CTCT|CATG.AGTC.+T.TCT|CATG.AGTC.+TC.CT|CATG.AGTC.+TCT.T|CATG.AGTC.+TCTC.|CATGT.GTC.+.CTCT|CATGT.GTC.+T.TCT|CATGT.GTC.+TC.CT|CATGT.GTC.+TCT.T|CATGT.GTC.+TCTC.|CATGTA.TC.+.CTCT|CATGTA.TC.+T.TCT|CATGTA.TC.+TC.CT|CATGTA.TC.+TCT.T|CATGTA.TC.+TCTC.|CATGTAG.C.+.CTCT|CATGTAG.C.+T.TCT|CATGTAG.C.+TC.CT|CATGTAG.C.+TCT.T|CATGTAG.C.+TCTC.|CATGTAGT..+.CTCT|CATGTAGT..+T.TCT|CATGTAGT..+TC.CT|CATGTAGT..+TCT.T|CATGTAGT..+TCTC.
# condiSet1: s/^.*CATG.AGTC//g;s/^.*CATGT.GTC//g;s/^.*CATGTA.TC//g;s/^.*CATGTAG.C//g;s/^.*CATGTAGT.//g
# condiSet2: s/.CTCT.*$//g;s/T.TCT.*$//g;s/TC.CT.*$//g;s/TCT.T.*$//g;s/TCTC..*$//g
# Pre-filtre ExactEnd: 3173 /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A15.seq.exactEachEnd.MS
# Pre-filtre MutInEnd: 306 /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A15.seq.Max1MutEachEnd.MS
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A15.seq.MS.all ] 3122 lines.
#
#> SophieMS_GenotyperMS_unProfil.r /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A15.seq.MS.all.nb A
#> SophieMS_GenotyperMS_unProfil_v2.r /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A15.seq.exactEachEnd.MS.MS_noMut.nb /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A15.seq.exactEachEnd.MS.MS_Mut.nb /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A15.seq.Max1MutEachEnd.MS.MS_noMut.nb /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A15.seq.Max1MutEachEnd.MS.MS_Mut.nb  A  /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A15.seq.MS
# =============[ END ]===========
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A15.seq.MS.all.nb ]
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A15.seq.MS.all.profil.png ]
# [Creat: /env/gfs/Projects/yshen/21_SophieMS_Iseq100/Papier/Example/Example_IV.1/Output/CCS_QC20/Q20_P3_bc1001_A15A20AT20/Q20_P3_bc1001_A15A20AT20.bam.A15.seq.MS.profil_v2.png ]
#
#nbRead	nbMSall	nb_EndnoMut_MSnoMut	nb_EndnoMut_MSMut	nb_EndMut_MSnoMut	nb_EndMut_MSMut
215669	3122	3119	3	0	0
